Flare Question and Treatment Question

I have gone head long into a flare...When I go into a flare a particular white blood cell(histamine producing) goes through the roof..I immediately get put on antibiotics and a higher dosage of predisone..I then worry about some of my symptoms being from an bacterial imbalance intestines' wise from the antibiotics..I also get respiratory symptoms, joint pain, severe fatigue when that certain white blood cell goes through the roof? Does anyone else have this problem? Do you have a different treatment? I am off gluten and have been and am not doing dairy now..Any natural supplements that can help this as well??

I have been taking benedryl 20mg at night for along time before this--I was given 500 mg of Cipro twice a day and told to start and increase and then taper down predisone starting at 40mgs--I was on 10mgs for awhile..I was having some flare related symptoms for awhile..I ended up with a tooth abcess before this and I think my immune system decided to go off the wall..I am worried because I have felt so lousy I have not wanted to go to work even though I have--I started a new job in Dec and moved from the central states to Las Vegas--I am having severe headaches, fatigue, joint pain, blurred vision, low grade fevers, nausea, respiratory symtoms, mouth sores, severe ibs like symptoms, and hot flashes..I have stayed faithful pretty much to gluten free so I do not think it is diet related..

Thank you Kazbern & Nice Cup of Tea--I usually try and do more fruit for digestibility than veggies when I get like this..Maybe I have been making a mistake...I have had bacterial overgrowth problems in the past..I am not passing any blood or mucous..I am severely nausated w/ no appetite..I usually am given flagyl with the cipro or just flagyl for this..I would like to try to tackle the overgrowth issue more aggressively with my diet..Eosinophils(a certain type of white blood cells) like double and triple in me when I flare..This can happen in Crohns..I just get a rash of other nasty side effects in my body when this happens..This usually when the severe muscle/joint pain, dizzyness, fatigue, and headaches get out of control that makes me not want to get of bed..I wonder if other people with an overgrowth problem share this issue and why it happens??