Welcome to HealingWell, Bella. I'm sorry you're having so many problems. None of us are doctors or diagnosticians, so don't know how much help we can be with your general question, but if you have the results of you thyroid tests (with the corresponding reference numbers), we may be able to help explain that for you.
I've also had shoulder surgery, and I feel your pain. I found icing to be very helpful, especially after my therapy sessions.
Steroid use can cause bone problems, but these involve bone loss rather than calcium deposits.
Hope you're feeling better soon.