Sounds like exercise is protective against disease activity. And is safe for IBD patients. I'm not one who likes anecdotal statements. So, lets jump to the scientific journals and what studies have shown.
"There is considerable interest in the impact of exercise on individuals with IBD. Our study is the largest prospective analysis of exercise in patients with IBD to date with 1,857 participants included, 1,308 with CD and 549 with UC/IC. We found that increased levels of exercise may decrease the risk active disease at 6 months by 32% in individuals with CD and by 24% in individuals with UC/IC. This decrease in risk persisted when exercise status was adjusted for age, education, steroids, gender, BMI, current smoking status and disease duration. Studies have demonstrated that patients who exercise more are at decreased risk to develop CD2, 3 however there is a paucity of published data about
the effects of exercise in patients with established IBD. Much of what is published about
the effects of exercise on the gastrointestinal system is incongruent and has to be extrapolated to patients with IBD."
/www.ncbi.nlm.nih.gov/pmc/articles/PMC4402239/"INFLAMMATORY BOWEL DISEASE
A limited number of studies have investigated the preventive effect of physical activity on Crohn's disease (CD) or ulcerative colitis (UC). Sonnenberg38 was the first to show a beneficial effect of physical activity by comparing incidence rates of inflammatory bowel disease among several occupations in 12 014 individuals. Sedentary and physically less demanding occupations were associated with a higher risk of inflammatory bowel disease than physically demanding occupations. As in other occupational cross sectional studies, this study may have been hampered by limitations, for instance, less demanding occupations may have attracted the chronically ill and previous occupations were not recorded. Persson and colleagues39confirmed this association in a case control study in patients with CD, but not with UC. They found RR values of 0.6 and 0.5 for weekly and daily exercise, respectively. Since then, inconsistent results have been obtained: one case control study40showed a reduced risk, both for physically active CD and UC patients, while another study in CD patients did not.41 Postulated underlying mechanisms were the stress reducing effects of physical activity as well as changes in local neuro-immuno-endocrine effects.42
While the preventive effect of physical activity remains inconclusive, it has become clear that physical activity is not harmful for patients with inflammatory bowel disease,42despite acute exercise related responses, such as increased serum malondialdehyde levels and activated neutrophils.43
Nevertheless, physical activity should be promoted as these patients have muscle weakness and are at risk of osteoporosis.44 This risk is especially high with glucocorticoid medication, which causes muscle atrophy and weakness, osteoporosis, and oste
openia.42 In addition, physical activity may reduce disease activity and improve physical health, general well being, perceived stress, and quality of life.42"
gut.bmj.com/content/48/3/435