Hi Justascarf,
I've had lots of pain in scar tissues as well, but I also came across an article by Tom Grier, titled "The Complexities of Lyme Disease - A Microbiology Tutorial". Here is a quote from that article that I think will help.
"...Dr. Klempner also showed that the spirochete could enter cells such as the human fibroblast cell (The skin cell that makes scar tissue.) and hide. Here the pathogen was protected from the immune system, and could thrive without assault."
This can be found here:
www.angelfire.com/me2/StarShar/Spiros.html