Hormones bouncing back after treatment-help!

After 13 years of misdiagnoses and almost a year of herbal and traditional antibiotic therapy, I feel well! I'm about 5 weeks into feeling good and I've noticed a few things. First, I don't need as much thyroid hormone. I've cut back to half dose of Armour, but I may not even need that. My thyroid is bouncing back nicely. I have also been having numerous hot flashes in the past few weeks. I've never had these before. I'm 48 years old and have one ovary after partial hysterectomy. I now have hot flashes up to 7 times a day! Ugh.
Has anyone experienced their hormones bouncing up and down after successful treatment? How do I explain it to my gyno? It can't just be a coincidence can it?

I agree with Girlie - keep monitoring your levels to be sure that they do settle down and at the right amount.

I also don't think many gyno's will understand, unless they are Lyme literate.

I doubt it's coincidence - we know that Lyme and company messes with all aspects of our body systems.

Thanks for the replies. I haven't been able to find much info on what to expect when healing from chronic Lyme and co infections. All I know is my body is working normally again and I'm thrilled. I'll take normal fluctuations in hormones over suppressed hormones anyday!
My treatment consisted of 8 months of Cowden Protocol followed by two months of triple antibiotic therapy. I followed the Horowitz protocol for Lyme and Bartonella. I had two allergic reactions during the traditional route, but pulled through and I'm here feeling fantastic! It was extremely hard to go through therapy, but I had hoped for recovery and found it!
My FB page is: https://m.facebook.com/Looking-Great-Feeling-Awful-Healing-from-Chronic-Lyme-and-MSIDS-1666098783634432/